• Mandava, S., Makowski, L., Uzubell, J., Devarapalli, S. and Rodi, D.J. RELIC - A Database for peptide sequence analysis and identification of small molecule binding sites. (2004) Proteomics. 2004, 4, 1439–1460.

  • Makowski, L. and Rodi, D.J. (2003) Genome-wide characterization of the binding repertoire of small molecule drugs. Human Genomics. 1:41-51.

  • Fischetti, R.F., Rodi, D.J., Mirza, A., Irving, T.C., Kondrashkina, E.and Makowski, L. (2003) High Resolution Wide Angle X-Ray Scattering of Protein Solutions: Effects of Beam Dose on Protein Integrity. J Synchrotron Radiat. 2003 Sep 1;10(Pt 5):398-404.

  • Rodi, D.J., Mandava, S. and Makowski, L. (2003) M13 bacteriophage structure and biology, In: Phage Display in Biotechnology and Drug Discovery (ed. Sachdev Sidhu), invited chapter, in press.

  • Rodi, D.J., Soares, A. and Makowski, L. (2002) Quantitative Assessment of Peptide Sequence Diversity in M13 Combinatorial Peptide Phage Display Libraries.  J. Mol. Biol. 322:1039.

  • Makowski, . and A. Soares (2002) Estimating the Diversity of Peptides Populations from Limited Sequence Data. Bioinformatics 19:483-489.

  • Makowski, L. (2002) Physicochemical Correlates of Amino Acid Substitution Matrices (in preparation).

  • Rodi, D.J.,  L. Makowski and B. K Kay (2001) One from column A and two from column B: the benefits of phage display in molecular-recognition studies.  Current Opinion in Chemical Biology 6: 92-96. [Abstract]

  • Rodi, D.J. and L. Makowski (2001) Parsing Intermolecular Interactions.   Combinatorial Chemistry and High Throughput Screening. 4: 533-534.

  • Rodi, D.J., Agoston, G.E., Manon, R., Lapcevich, R., Green, S.J. and Makowski, L. (2001). Identification of small molecule binding sites within proteins using phage display technology. Combinatorial Chemistry and High Throughput Screening. 4(4) 553-572. [Abstract]

  • Mu, X.-Q. and L. Makowski (2000)  The likelihood function in fiber diffraction. Acta Crystallogr. A56, 168-177. [Abstract]

  • Rodi, D.J. and L. Makowski (1999) Phage display technology:  Finding a needle in a vast molecular haystack.  Current Opinion Biotech.  10, 87-93. [Abstract]

  • Rodi, D.J., Janes, R.W., Sanganee, H.J., Holton, R., Wallace, B.A. and Makowski, L., (1999) Screening a library of phage-displayed peptides identifies human Bcl-2 as a taxol-binding protein. J. Mol. Biol. 285, 197-204. [Abstract]

  • Rodi, D.J. and L. Makowski (1999) Similarity between the sequences of taxol-selected peptides and the disordered loop of the anti-apoptotic protein, Bcl-2.  in Proc. Pacific Symp. Biocomputing. 532-541. [Abstract]

  • Cheng, W., E. Bullitt, L. Bhattacharyya, C.F. Brewer and L. Makowski (1998)  Electron Microscopy and x-ray diffraction studies of Lotus Tetragonolobus A Isolectin cross-linked with a bivalent Lewis X oligosaccharide.  J. Biol. Chem. 273, 35016-35022. [Abstract]

  • Ivanova, M. and L. Makowski (1998)  Background estimation of fiber diffraction patterns by iterative low pass filtering.  Acta Crystallogr. A54, 626-631.

  • Mu, X.-Q., L. Makowski and B. Magdoff-Fairchild (1998) Analysis of the Stability of Hemoglobin S Double-strands. Biop. J.  74, 655-668. [Abstract]

  • Makowski, L. (1998) Don Caspar, tobacco mosaic virus and protein-protein interactions (editorial). Proteins: Structure, Function and Genetics, 109-112.

  • Bullitt, E. and L. Makowski (1998) Bacterial adhesion pili are heterologous assemblies of similar subunits. Biop. J. 74, 623-632. [Abstract]

  • Makowski, L. (1998) An Unreasonable Man in a quasi-equivalent world. (editorial)  Biop. J. 74, 534-536.

  • Bullitt, E., C.H. Jones, R. Striker, G. Soto, F. Jacob-Dubuisson, J. Pinker, M.J. Wick, L. Makowski, and S.J. Hultgren (1996) Development of pilus organelle sub-assemblies In Vitro depends on chaperone uncapping of a beta zipper.  Proc. Nat. Acad. Sci ( USA ) 93; 12890-12895.

  • Rodi, D.J. and L. Makowski (1997) Transfer RNA isoacceptor availability contributes to sequence censorship in a library of phage displayed peptides.  in Proceedings of the 22nd Tanaguchi International Symposium. (Nov. 18-21, 1996).

  • Kishchenko, G. and L. Makowski (1997) Shuffling of structural elements in filamentous bacteriophages.  Proteins: Structure, Function and Genetics 27; 1-5. [Abstract]

  • Mu, X.-Q., L. Makowski and B. Magdoff-Fairchild (1997) X-ray diffraction from a helix of any length which displays cumulative azimuthal disorder. Acta Crystallographica A53; 55-62. [Abstract]

  • Makowski, L. and M. Russel (1997) Structure and assembly of filamentous bacteriophages. in Structural Biology of Viruses (eds. W. Chiu, R.M. Burnnet, and R. Garcia).

  • Batliwala, H., T. Somasundaram, E.E. Uzgiris and L. Makowski (1995) Methane-induced haemolysis of human erythrocytes.  Bioch. J.  307; 433-438. [Abstract]

  • Somasundaram, T. and L. Makowski (1995) Optical cell for the study of biological systems under high gas pressures. Rev. Sci. Instruments. 66; 3311-3316.

  • Bullitt, E. and L. Makowski (1995) Structural polymorphism of bacterial adhesion pili. Nature 373, 164-167. [Abstract]

  • Makowski, L. (1995)  Taxol found on tubulin. Nature 375; 361-362.

  • Petrenko, V.A. and L. Makowski (1994) Potential applications of phage display to bioremediation. in Proc. Second International Symp. In Situ and On-Site Bioreclamation.

  • Kishchenko, G., H. Batliwala and L. Makowski (1994) Structure of a foreign peptide displayed on the surface of bacteriophage M13. J. Mol. Biol. 241, 208-213. [Abstract]

  • Makowski, L. (1994) Phage display:  Structure, assembly and engineering of filamentous bacteriophage M13.  Current Opinion in Structural Biology 4, 225-230.

  • Makowski, L. (1993) Structural constraints on the display of foreign peptides on filamentous bacteriophages.  Gene 128; 5-11. [Abstract]

  • Bhattacharjee, S., M. Glucksman and L. Makowski (1992)  Structural polymorphism correlated to surface charge in filamentous bacteriophages.  Biop. J. 61; 7625-735. [Abstract]

  • Specthrie, L., E. Bullitt, K. Horiuchi, P. Model, M. Russel and L. Makowski (1992)  Construction of a microphage variant of filamentous bacteriophage.  J. Mol. Biol. 228; 720-724. [Abstract]

  • Makowski, L. (1992) Terminating a macromolecular helix:  Structural model for the minor proteins of bacteriophage M13. J. Mol. Biol. 228; 885-892. [Abstract]

  • Gong, M.F. and L. Makowski (1992) Helical structure of P-Pili from Esherichia Coli:  Evidence from x-ray fiber diffraction and scanning transmission electron microscopy. J. Mol. Biol. 228; 735-742. [Abstract]

  • Glucksman, M., S. Bhattacharjee and L. Makowski (1992)  Three-dimensional structure of a cloning vector.  X-ray diffraction studies of filamentous bacteriophage M13 at 7 Å resolution .J. Mol. Biol. 226; 455-470. [Abstract]

  • Nambudripad, R., W. Stark and L. Makowski. (1991) Neutron diffraction studies of the structure of filamentous bacteriophage Pf1:  Demonstration that the coat protein consists of a pair of alpha helices with an intervening, non-helical surface loop.  J. Mol. Biol. 220: 359-379.[Abstract]

  • Nambudripad, R., W. Stark, and L. Makowski (1991)  Membrane mediated assembly of filamentous bacteriophage Pf1 coat protein. Science 252, 1305-1308.

  • Makowski, L.  (1991) An estimate of the total number of independent structural parameters measurable in a fiber diffraction pattern.  Acta Crystallographica A47, 562-567.

  • Makowski, L. (1989) Preparation of magnetically oriented specimens for diffraction experiments. in Synchrotron Radiation in Biology (R.M. Sweet and A.D. Woodhead eds.), pp 341-347.

  • Stark, W., M.J. Glucksman and L. Makowski (1988) Conformation of the coat protein of filamentous bacteriophage Pf1 determined by neutron diffraction from magnetically oriented gels of specifically deuterated virions.  J. Mol. Biol. 199, 171-182. [Abstract]

  • Makowski, L. (1988) X-ray diffraction studies of gap junction structure. Adv. in Cell Biology, 2, 119-158.

  • Specthrie, L., J. Greenberg, M.J. Glucksman, J. Diaz and L. Makowski (1987) Structural responsiveness of filamentous bacteriophage Pf1: Comparison of virion structure in fibers and solution: The effect of temperature and ionic strength.  Biop. J. 52, 199-214. [Abstract]

  • Weisel, J., C. Nagaswami and L. Makowski (1987) Twisting of fibrin fibers limits their radial growth.  Proc. Natl. Acad. Sci. ( U.S.A. ) 84, 8991-8995.

  • Stubbs, G., K. Namba and L. Makowski (1986) Application of restrained least-squares refinement to fiber diffraction from macromolecular assemblies.  Biop. J. 49, 58-60.

  • Glucksman, M.J., R.D. Hay and L. Makowski (1986) X-ray diffraction from magnetically oriented solutions of macromolecular assemblies. Science. 231, 1273-1276. [Abstract]

  • Makowski, L. and B. Magdoff-Fairchild (1986) Polymorphism of sickle cell hemoglobin aggregates: Structural basis for limited radial growth.  Science. 234, 1228-1231.

  • Makowski, L. (1986) Propagation of phase errors during phase refinement and extension.  Acta Crystallographica, A42, 253-256.

  • Makowski, L. (1986) Gap junction structures: Comparison of x-ray diffraction data with data from electron microscopy of frozen hydrated specimens. Proc. XIth Int. Cong. on Electron Microscopy,f Kyoto, Japan , 1873-1876.

  • Makowski, L. (1985)Structural domains in gap junctions: Implications for the control of intercellular communication. In: Gap Junctions. (M.V.L. Bennett and D. Spray, eds.) Cold Spring Harbor Laboratories. 5-12.

  • Makowski, L., D.L.D. Caspar, W.C. Phillips and D.A, Goodenough (1984) Gap junction structures V. Structural chemistry inferred from x-ray diffraction measurements on sucrose accessibility and trypsin susceptibility.  J. Mol. Biol. 174, 449-481.

  • Makowski, L., D.L.D. Caspar, W.C. Phillips, T.S. Baker and D.A. Goodenough (1984) Gap junction structures VI. Variation and conservation in connexon conformation and packing.  Biop. J. 45, 208-218.

  • Makowski, L. (1984) Structural diversity in filamentous bacteriophages.  In: Biological Macromolecules and Assemblies, 1, The Viruses. (A. McPherson, ed.) John Wiley and Sons, N.Y. 203-253.

  • Makowski, L. and J. Li (1983) X-ray diffraction and electron microscope studies of the molecular structure of biological membranes.  In: Biomembrane Structure and Function (D. Chapman, ed.), Macmillan, London, 43-166.

  • Makowski, L. (1982) The use of continuous diffraction data as a phase constraint II. Application to fiber diffraction data.  J. Appl. Cryst. 15, 546-557.

  • Makowski, L., D.L.D. Caspar, D.A. Goodenough and W.C. Phillips (1982) Gap junction structures III. The effect of variations in the isolation procedure.  Biop. J. 37, 189-191.

  • Stubbs, G. and L. Makowski (1982) Coordinated use of isomorphous replacement and layer-line splitting  in the phasing of fiber diffraction data.  Acta Crystallographica  A38, 417-425.

  • Makowski, L. (1981) The use of continuous diffraction data as a phase constraint I. One-dimensional theory.  J. Appl. Cryst. 14, 160-168.

  • Moody, M. and L. Makowski (1981) The structure of the tail core of bacteriophage T2. J. Mol. Biol. 150. 217-245.

  • Makowski, L. and D.L.D. Caspar (1981) The symmetries of filamentous phage particles.  J. Mol. Biol. 145, 611-617. [Abstract]

  • Makowski, L., D.L.D. Caspar and D.A. Marvin (1980) Filamentous bacteriophage Pf1 structure determined at 7 A resolution by refinement of models for the alpha-helical subunit.  J. Mol. Biol. 140, 149-181. [Abstract]

  • Makowski, L. (1980) Structural studies of the assembly of simple viruses, in Biological Recognition and Assembly; (D.S. Eisenberg, J.A. Lake and C.F. Fox, eds.) Alan R. Liss, Inc., New York, 233-258.[Abstract]

  • Makowski, L. (1980) Resolution of x-ray intensities by angular deconvolution, in Diffraction Methods for Structural Determination of Fibrous Polymers; (A.D. French and K.H. Gardner, eds.) American Chemical Society Symposium Series, 141, 139-148.

  • Makowski, L. (1978) Analysis of x-ray diffraction data from partially oriented specimens.  J. Appl. Cryst. 11, 273-283.

  • Caspar, D.L.D., D.A. Goodenough, L. Makowski, and W.C. Phillips (1977) Gap junction structures.  I. Coordinated electron microscopy and x-ray diffraction.  J. Cell Biol. 74, 605-628.

  • Makowski, L., D.L.D. Caspar, W.C. Phillips and D.A. Goodenough (1977) Gap junction structures II.  Analysis of the x-ray diffraction data.  J. Cell Biol. 74, 629-645.

  • Makowski, L. (1976) An x-ray diffraction study of membrane gap junctions.  Ph.D. Thesis, Massachusetts Institute of Technology.

  • Makowski, L. and M. Glicksman (1973) Disorder scattering in solid solutionsof III-V semiconducting compounds. J. Phys. Chem. Solids 34, 487-492.
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